Sunday, February 12, 2023

Show HN: PyCirclize – Circular Visualization in Python

pyCirclize: Circular visualization in Python

Python3 OS License Latest PyPI version conda-forge CI

Table of contents

Overview

pyCirclize is a circular visualization python package implemented based on matplotlib. This package is developed for the purpose of easily and beautifully plotting circular figure such as Circos Plot and Chord Diagram in Python. In addition, useful genome and phylogenetic tree visualization methods for the bioinformatics field are also implemented. pyCirclize was inspired by circlize and pyCircos. More detailed documentation is available here.

pyCirclize_gallery.png
Fig.1 pyCirclize example plot gallery

Installation

Python 3.8 or later is required for installation.

Install PyPI package:

Install conda-forge package:

conda install -c conda-forge pycirclize

API Usage

API usage is described in each of the following sections in the document.

Not Implemented Features

List of features implemented in other Circos plotting tools but not yet implemented in pyCirclize. I may implement them when I feel like it.

  • Plot histogram
  • Plot boxplot
  • Plot violin
  • Plot raster image
  • Label position auto adjustment


from Hacker News https://ift.tt/rqzIpyS

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